Publications

1. Castells-Graells R, Yeates TO. Making topological protein links using enzymatic reactions.. National science review, 2024.
2. Miller JE, Agdanowski MP, Dolinsky JL, Sawaya MR, Cascio D, Rodriguez JA, Yeates TO. AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography.. Acta crystallographica. Section D, Structural biology, 2024.
3. Gladkov N, Scott EA, Meador K, Lee EJ, Laganowsky AD, Yeates TO, Castells-Graells R. Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion.. Protein science : a publication of the Protein Society, 2024.
4. Meador K, Castells-Graells R, Aguirre R, Sawaya MR, Arbing MA, Sherman T, Senarathne C, Yeates TO. A suite of designed protein cages using machine learning and protein fragment-based protocols.. Structure (London, England : 1993), 2024.
5. Gee M, Atai K, Coller HA, Yeates TO, Castells-Graells R. Designed fluorescent protein cages as fiducial markers for targeted cell imaging.. bioRxiv : the preprint server for biology, 2024.
6. Morselli M, Holton TR, Pellegrini M, Yeates TO, Arbing MA. Design and Construction of a Designed Ankyrin Repeat Protein (DARPin) Display Library.. Current protocols, 2024.
7. Lee EJ, Gladkov N, Miller JE, Yeates TO. Design of Ligand-Operable Protein-Cages That Open Upon Specific Protein Binding.. ACS synthetic biology, 2023.
8. Gladkov N, Scott EA, Meador K, Lee EJ, Laganowsky AD, Yeates TO, Castells-Graells R. Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion.. bioRxiv : the preprint server for biology, 2023.
9. Ochoa JM, Dershwitz P, Schappert M, Sinha S, Herring TI, Yeates TO, Bobik TA. A single shell protein plays a major role in choline transport across the shell of the choline utilization microcompartment of Escherichia coli 536.. Microbiology (Reading, England), 2023.
10. Meador K, Castells-Graells R, Aguirre R, Sawaya MR, Arbing MA, Sherman T, Senarathne C, Yeates TO. A Suite of Designed Protein Cages Using Machine Learning Algorithms and Protein Fragment-Based Protocols.. bioRxiv : the preprint server for biology, 2023.
11. Castells-Graells R, Meador K, Arbing MA, Sawaya MR, Gee M, Cascio D, Gleave E, Debreczeni JÉ, Breed J, Leopold K, Patel A, Jahagirdar D, Lyons B, Subramaniam S, Phillips C, Yeates TO. Cryo-EM structure determination of small therapeutic protein targets at 3 Å-resolution using a rigid imaging scaffold.. Proceedings of the National Academy of Sciences of the United States of America, 2023.
12. Miller JE, Castells-Graells R, Arbing MA, Munoz A, Jiang YX, Espinoza CT, Nguyen B, Moroz P, Yeates TO. Design of Beta-2 Microglobulin Adsorbent Protein Nanoparticles.. Biomolecules, 2023.
13. Stewart A, Dershwitz P, Stewart C, Sawaya MR, Yeates TO, Semrau JD, Zischka H, DiSpirito AA, Bobik TA. Crystal structure of MbnF: an NADPH-dependent flavin monooxygenase from Methylocystis strain SB2.. Acta crystallographica. Section F, Structural biology communications, 2023.
14. Brems MA, Runkel R, Yeates TO, Virnau P. AlphaFold predicts the most complex protein knot and composite protein knots.. Protein science : a publication of the Protein Society, 2022.
15. Miller JE, Srinivasan Y, Dharmaraj NP, Liu A, Nguyen PL, Taylor SD, Yeates TO. Designing Protease-Triggered Protein Cages.. Journal of the American Chemical Society, 2022.
16. Ochoa JM, Mijares O, Acosta AA, Escoto X, Leon-Rivera N, Marshall JD, Sawaya MR, Yeates TO. Structural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartments.. Acta crystallographica. Section F, Structural biology communications, 2021.
17. Ochoa JM, Yeates TO. Recent structural insights into bacterial microcompartment shells.. Current opinion in microbiology, 2021.
18. Ochoa JM, Bair K, Holton T, Bobik TA, Yeates TO. MCPdb: The bacterial microcompartment database.. PloS one, 2021.
19. Laniado J, Cannon KA, Miller JE, Sawaya MR, McNamara DE, Yeates TO. Geometric Lessons and Design Strategies for Nanoscale Protein Cages.. ACS nano, 2021.
20. Yeates EO, Juillard C, Grigorian A, Schellenberg M, Owattanapanich N, Barmparas G, Margulies D, Garber K, Cryer H, Tillou A, Burruss S, Penaloza-Villalobos L, Lin A, Figueras RA, Brenner M, Firek C, Costantini T, Santorelli J, Curry T, Wintz D, Biffl WL, Schaffer KB, Duncan TK, Barbaro C, Diaz G, Johnson A, Chinn J, Naaseh A, Leung A, Grabar C, Yeates TO, Nahmias J. The coronavirus disease 2019 (COVID-19) stay-at-home order's unequal effects on trauma volume by insurance status in Southern California.. Surgery, 2021.
21. Laniado J, Meador K, Yeates TO. A fragment-based protein interface design algorithm for symmetric assemblies.. Protein engineering, design & selection : PEDS, 2021.
22. Stewart AM, Stewart KL, Yeates TO, Bobik TA. Advances in the World of Bacterial Microcompartments.. Trends in biochemical sciences, 2021.
23. Mulligan VK, Kang CS, Sawaya MR, Rettie S, Li X, Antselovich I, Craven TW, Watkins AM, Labonte JW, DiMaio F, Yeates TO, Baker D. Computational design of mixed chirality peptide macrocycles with internal symmetry.. Protein science : a publication of the Protein Society, 2020.
24. Laniado J, Yeates TO. A complete rule set for designing symmetry combination materials from protein molecules.. Proceedings of the National Academy of Sciences of the United States of America, 2020.
25. Ochoa JM, Nguyen VN, Nie M, Sawaya MR, Bobik TA, Yeates TO. Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.. Protein science : a publication of the Protein Society, 2020.
26. Thompson MC, Yeates TO, Rodriguez JA. Advances in methods for atomic resolution macromolecular structure determination.. F1000Research, 2020.
27. Cannon KA, Nguyen VN, Morgan C, Yeates TO. Design and Characterization of an Icosahedral Protein Cage Formed by a Double-Fusion Protein Containing Three Distinct Symmetry Elements.. ACS synthetic biology, 2020.
28. Yeates TO, Agdanowski MP, Liu Y. Development of imaging scaffolds for cryo-electron microscopy.. Current opinion in structural biology, 2020.
29. Steyaert J, Yeates TO. Editorial overview: Engineered proteins as tools in structural biology.. Current opinion in structural biology, 2020.
30. McConnell SA, Cannon KA, Morgan C, McAllister R, Amer BR, Clubb RT, Yeates TO. Designed Protein Cages as Scaffolds for Building Multienzyme Materials.. ACS synthetic biology, 2020.
31. Cannon KA, Park RU, Boyken SE, Nattermann U, Yi S, Baker D, King NP, Yeates TO. Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering.. Protein science : a publication of the Protein Society, 2019.
32. Yeates TO, McPherson A. The structure of bovine β-lactoglobulin in crystals grown at pH 3.8 exhibiting novel threefold twinning.. Acta crystallographica. Section F, Structural biology communications, 2019.
33. Yeates TO. Protein assembles into Archimedean geometry.. Nature, 2019.
34. Liu Y, Huynh DT, Yeates TO. A 3.8 Å resolution cryo-EM structure of a small protein bound to an imaging scaffold.. Nature communications, 2019.
35. Cannon KA, Ochoa JM, Yeates TO. High-symmetry protein assemblies: patterns and emerging applications.. Current opinion in structural biology, 2019.
36. Thompson MC, Cascio D, Yeates TO. Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.. Acta crystallographica. Section D, Structural biology, 2018.
37. Fristedt R, Hu C, Wheatley N, Roy LM, Wachter RM, Savage L, Harbinson J, Kramer DM, Merchant SS, Yeates T, Croce R. RAF2 is a RuBisCO assembly factor in Arabidopsis thaliana.. The Plant journal : for cell and molecular biology, 2018.
38. Liu Y, Gonen S, Gonen T, Yeates TO. Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.. Proceedings of the National Academy of Sciences of the United States of America, 2018.
39. Yeates TO, Wheatley NM. Putting the RuBisCO pieces together.. Science (New York, N.Y.), 2017.
40. Yeates TO, Bobik TA. Facile methods for heterologous production of bacterial microcompartments in diverse host species.. Microbial biotechnology, 2017.
41. Park J, Chun S, Bobik TA, Houk KN, Yeates TO. Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell.. The journal of physical chemistry. B, 2017.
42. Yeates TO. Geometric Principles for Designing Highly Symmetric Self-Assembling Protein Nanomaterials.. Annual review of biophysics, 2017.
43. Lai YT, Hura GL, Dyer KN, Tang HY, Tainer JA, Yeates TO. Designing and defining dynamic protein cage nanoassemblies in solution.. Science advances, 2016.
44. Yeates TO, Liu Y, Laniado J. The design of symmetric protein nanomaterials comes of age in theory and practice.. Current opinion in structural biology, 2016.
45. Wheatley NM, Eden KD, Ngo J, Rosinski JS, Sawaya MR, Cascio D, Collazo M, Hoveida H, Hubbell WL, Yeates TO. A PII-Like Protein Regulated by Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated CPII Protein.. Journal of molecular biology, 2016.
46. Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D. Accurate design of megadalton-scale two-component icosahedral protein complexes.. Science (New York, N.Y.), 2016.
47. Chowdhury C, Chun S, Sawaya MR, Yeates TO, Bobik TA. The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene.. Molecular microbiology, 2016.
48. Jorda J, Sawaya MR, Yeates TO. Progress in low-resolution ab initio phasing with CrowdPhase.. Acta crystallographica. Section D, Structural biology, 2016.
49. Yeates TO. Responses to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin.. Acta crystallographica. Section D, Biological crystallography, 2015.
50. Leibly DJ, Arbing MA, Pashkov I, DeVore N, Waldo GS, Terwilliger TC, Yeates TO. A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.. Structure (London, England : 1993), 2015.
51. Tsai Y, Holton T, Yeates TO. Diffusion accessibility as a method for visualizing macromolecular surface geometry.. Protein science : a publication of the Protein Society, 2015.
52. Bale JB, Park RU, Liu Y, Gonen S, Gonen T, Cascio D, King NP, Yeates TO, Baker D. Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression.. Protein science : a publication of the Protein Society, 2015.
53. Lai YT, Jiang L, Chen W, Yeates TO. On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.. Protein engineering, design & selection : PEDS, 2015.
54. Bobik TA, Lehman BP, Yeates TO. Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways.. Molecular microbiology, 2015.
55. Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG. Redesigning photosynthesis to sustainably meet global food and bioenergy demand.. Proceedings of the National Academy of Sciences of the United States of America, 2015.
56. McNamara DE, Senese S, Yeates TO, Torres JZ. Structures of potent anticancer compounds bound to tubulin.. Protein science : a publication of the Protein Society, 2015.
57. Liu Y, Jorda J, Yeates TO, Bobik TA. The PduL Phosphotransacylase Is Used To Recycle Coenzyme A within the Pdu Microcompartment.. Journal of bacteriology, 2015.
58. Thompson MC, Cascio D, Leibly DJ, Yeates TO. An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.. Protein science : a publication of the Protein Society, 2015.
59. Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA. Selective molecular transport through the protein shell of a bacterial microcompartment organelle.. Proceedings of the National Academy of Sciences of the United States of America, 2015.
60. Jorda J, Liu Y, Bobik TA, Yeates TO. Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment.. PLoS computational biology, 2015.
61. Thompson MC, Crowley CS, Kopstein J, Bobik TA, Yeates TO. Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor.. Acta crystallographica. Section F, Structural biology communications, 2014.
62. Lai YT, Reading E, Hura GL, Tsai KL, Laganowsky A, Asturias FJ, Tainer JA, Robinson CV, Yeates TO. Structure of a designed protein cage that self-assembles into a highly porous cube.. Nature chemistry, 2014.
63. Bobik TA, Morales EJ, Shin A, Cascio D, Sawaya MR, Arbing M, Yeates TO, Rasche ME. Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii.. Acta crystallographica. Section F, Structural biology communications, 2014.
64. Chowdhury C, Sinha S, Chun S, Yeates TO, Bobik TA. Diverse bacterial microcompartment organelles.. Microbiology and molecular biology reviews : MMBR, 2014.
65. Thompson MC, Wheatley NM, Jorda J, Sawaya MR, Gidaniyan SD, Ahmed H, Yang Z, McCarty KN, Whitelegge JP, Yeates TO. Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein.. Journal of molecular biology, 2014.
66. King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D. Accurate design of co-assembling multi-component protein nanomaterials.. Nature, 2014.
67. Jorda J, Sawaya MR, Yeates TO. CrowdPhase: crowdsourcing the phase problem.. Acta crystallographica. Section D, Biological crystallography, 2014.
68. Sinha S, Cheng S, Sung YW, McNamara DE, Sawaya MR, Yeates TO, Bobik TA. Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the Pdu microcompartment.. Journal of molecular biology, 2014.
69. Jiménez-Osés G, Osuna S, Gao X, Sawaya MR, Gilson L, Collier SJ, Huisman GW, Yeates TO, Tang Y, Houk KN. The role of distant mutations and allosteric regulation on LovD active site dynamics.. Nature chemical biology, 2014.
70. Okamoto R, Mandal K, Sawaya MR, Kajihara Y, Yeates TO, Kent SB. (Quasi-)racemic X-ray structures of glycosylated and non-glycosylated forms of the chemokine Ser-CCL1 prepared by total chemical synthesis.. Angewandte Chemie (International ed. in English), 2014.
71. McNamara DE, Cascio D, Jorda J, Bustos C, Wang TC, Rasche ME, Yeates TO, Bobik TA. Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer.. The Journal of biological chemistry, 2014.
72. Wheatley NM, Sundberg CD, Gidaniyan SD, Cascio D, Yeates TO. Structure and identification of a pterin dehydratase-like protein as a ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) assembly factor in the α-carboxysome.. The Journal of biological chemistry, 2014.
73. Thompson MC, Yeates TO. A challenging interpretation of a hexagonally layered protein structure.. Acta crystallographica. Section D, Biological crystallography, 2013.
74. Nguyen HB, Hung LW, Yeates TO, Terwilliger TC, Waldo GS. Split green fluorescent protein as a modular binding partner for protein crystallization.. Acta crystallographica. Section D, Biological crystallography, 2013.
75. Yeates TO, Jorda J, Bobik TA. The shells of BMC-type microcompartment organelles in bacteria.. Journal of molecular microbiology and biotechnology, 2013.
76. Lai YT, Tsai KL, Sawaya MR, Asturias FJ, Yeates TO. Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly.. Journal of the American Chemical Society, 2013.
77. Wheatley NM, Gidaniyan SD, Liu Y, Cascio D, Yeates TO. Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins.. Protein science : a publication of the Protein Society, 2013.
78. Jorda J, Lopez D, Wheatley NM, Yeates TO. Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria.. Protein science : a publication of the Protein Society, 2013.
79. Lai YT, King NP, Yeates TO. Principles for designing ordered protein assemblies.. Trends in cell biology, 2012.
80. King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. Computational design of self-assembling protein nanomaterials with atomic level accuracy.. Science (New York, N.Y.), 2012.
81. Lai YT, Cascio D, Yeates TO. Structure of a 16-nm cage designed by using protein oligomers.. Science (New York, N.Y.), 2012.
82. Jones EY, Yeates TO. Structure and function in complex macromolecular assemblies: some evolutionary themes.. Current opinion in structural biology, 2012.
83. Yeates TO, Kent SB. Racemic protein crystallography.. Annual review of biophysics, 2012.
84. Sawaya MR, Pentelute BL, Kent SB, Yeates TO. Single-wavelength phasing strategy for quasi-racemic protein crystal diffraction data.. Acta crystallographica. Section D, Biological crystallography, 2011.
85. Johnson E, Nguyen PT, Yeates TO, Rees DC. Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition.. Protein science : a publication of the Protein Society, 2011.
86. Laganowsky A, Zhao M, Soriaga AB, Sawaya MR, Cascio D, Yeates TO. An approach to crystallizing proteins by metal-mediated synthetic symmetrization.. Protein science : a publication of the Protein Society, 2011.
87. Pickens LB, Sawaya MR, Rasool H, Pashkov I, Yeates TO, Tang Y. Structural and biochemical characterization of the salicylyl-acyltranferase SsfX3 from a tetracycline biosynthetic pathway.. The Journal of biological chemistry, 2011.
88. Jorda J, Yeates TO. Widespread disulfide bonding in proteins from thermophilic archaea.. Archaea (Vancouver, B.C.), 2011.
89. Yeates TO. Nanobiotechnology: protein arrays made to order.. Nature nanotechnology, 2011.
90. Sayre TC, Lee TM, King NP, Yeates TO. Protein stabilization in a highly knotted protein polymer.. Protein engineering, design & selection : PEDS, 2011.
91. Yeates TO, Thompson MC, Bobik TA. The protein shells of bacterial microcompartment organelles.. Current opinion in structural biology, 2011.
92. Tsai SJ, Yeates TO. Bacterial microcompartments insights into the structure, mechanism, and engineering applications.. Progress in molecular biology and translational science, 2011.
93. Forse GJ, Ram N, Banatao DR, Cascio D, Sawaya MR, Klock HE, Lesley SA, Yeates TO. Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima.. Protein science : a publication of the Protein Society, 2011.
94. King NP, Jacobitz AW, Sawaya MR, Goldschmidt L, Yeates TO. Structure and folding of a designed knotted protein.. Proceedings of the National Academy of Sciences of the United States of America, 2010.
95. Banigan JR, Mandal K, Sawaya MR, Thammavongsa V, Hendrickx AP, Schneewind O, Yeates TO, Kent SB. Determination of the X-ray structure of the snake venom protein omwaprin by total chemical synthesis and racemic protein crystallography.. Protein science : a publication of the Protein Society, 2010.
96. Pentelute BL, Mandal K, Gates ZP, Sawaya MR, Yeates TO, Kent SB. Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography.. Chemical communications (Cambridge, England), 2010.
97. Crowley CS, Cascio D, Sawaya MR, Kopstein JS, Bobik TA, Yeates TO. Structural insight into the mechanisms of transport across the Salmonella enterica Pdu microcompartment shell.. The Journal of biological chemistry, 2010.
98. Han GW, Elsliger MA, Yeates TO, Xu Q, Murzin AG, Krishna SS, Jaroszewski L, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.. Acta crystallographica. Section F, Structural biology and crystallization communications, 2010.
99. Fan C, Cheng S, Liu Y, Escobar CM, Crowley CS, Jefferson RE, Yeates TO, Bobik TA. Short N-terminal sequences package proteins into bacterial microcompartments.. Proceedings of the National Academy of Sciences of the United States of America, 2010.
100. Yeates TO, Crowley CS, Tanaka S. Bacterial microcompartment organelles: protein shell structure and evolution.. Annual review of biophysics, 2010.
101. Tanaka S, Sawaya MR, Yeates TO. Structure and mechanisms of a protein-based organelle in Escherichia coli.. Science (New York, N.Y.), 2010.
102. Sprinzak E, Cokus SJ, Yeates TO, Eisenberg D, Pellegrini M. Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression.. BMC systems biology, 2009.
103. Dryden KA, Crowley CS, Tanaka S, Yeates TO, Yeager M. Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals.. Protein science : a publication of the Protein Society, 2009.
104. Gao X, Xie X, Pashkov I, Sawaya MR, Laidman J, Zhang W, Cacho R, Yeates TO, Tang Y. Directed evolution and structural characterization of a simvastatin synthase.. Chemistry & biology, 2009.
105. Tsai Y, Sawaya MR, Yeates TO. Analysis of lattice-translocation disorder in the layered hexagonal structure of carboxysome shell protein CsoS1C.. Acta crystallographica. Section D, Biological crystallography, 2009.
106. Yu F, Song A, Xu C, Sun L, Li J, Tang L, Yu M, Yeates TO, Hu H, He J. Determining the DUF55-domain structure of human thymocyte nuclear protein 1 from crystals partially twinned by tetartohedry.. Acta crystallographica. Section D, Biological crystallography, 2009.
107. Beeby M, Bobik TA, Yeates TO. Exploiting genomic patterns to discover new supramolecular protein assemblies.. Protein science : a publication of the Protein Society, 2009.
108. Tanaka S, Sawaya MR, Phillips M, Yeates TO. Insights from multiple structures of the shell proteins from the beta-carboxysome.. Protein science : a publication of the Protein Society, 2009.
109. Xie X, Pashkov I, Gao X, Guerrero JL, Yeates TO, Tang Y. Rational improvement of simvastatin synthase solubility in Escherichia coli leads to higher whole-cell biocatalytic activity.. Biotechnology and bioengineering, 2009.
110. Liu J, Mao Y, Lan E, Banatao DR, Forse GJ, Lu J, Blom HO, Yeates TO, Dunn B, Chang JP. Generation of oxide nanopatterns by combining self-assembly of S-layer proteins and area-selective atomic layer deposition.. Journal of the American Chemical Society, 2008.
111. Kudryashov DS, Durer ZA, Ytterberg AJ, Sawaya MR, Pashkov I, Prochazkova K, Yeates TO, Loo RR, Loo JA, Satchell KJ, Reisler E. Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.. Proceedings of the National Academy of Sciences of the United States of America, 2008.
112. Cheng S, Liu Y, Crowley CS, Yeates TO, Bobik TA. Bacterial microcompartments: their properties and paradoxes.. BioEssays : news and reviews in molecular, cellular and developmental biology, 2008.
113. Yeates TO, Yu F. Equations for determining tetartohedral twin fractions.. Acta crystallographica. Section D, Biological crystallography, 2008.
114. Crowley CS, Sawaya MR, Bobik TA, Yeates TO. Structure of the PduU shell protein from the Pdu microcompartment of Salmonella.. Structure (London, England : 1993), 2008.
115. Yeates TO, Kerfeld CA, Heinhorst S, Cannon GC, Shively JM. Protein-based organelles in bacteria: carboxysomes and related microcompartments.. Nature reviews. Microbiology, 2008.
116. King NP, Lee TM, Sawaya MR, Cascio D, Yeates TO. Structures and functional implications of an AMP-binding cystathionine beta-synthase domain protein from a hyperthermophilic archaeon.. Journal of molecular biology, 2008.
117. Sawaya MR, Kudryashov DS, Pashkov I, Adisetiyo H, Reisler E, Yeates TO. Multiple crystal structures of actin dimers and their implications for interactions in the actin filament.. Acta crystallographica. Section D, Biological crystallography, 2008.
118. Tanaka S, Kerfeld CA, Sawaya MR, Cai F, Heinhorst S, Cannon GC, Yeates TO. Atomic-level models of the bacterial carboxysome shell.. Science (New York, N.Y.), 2008.
119. Yeates TO, Clubb RT. Biochemistry. How some pili pull.. Science (New York, N.Y.), 2007.
120. Yeates TO, Norcross TS, King NP. Knotted and topologically complex proteins as models for studying folding and stability.. Current opinion in chemical biology, 2007.
121. Tanaka S, Sawaya MR, Kerfeld CA, Yeates TO. Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803.. Acta crystallographica. Section D, Biological crystallography, 2007.
122. King NP, Yeates EO, Yeates TO. Identification of rare slipknots in proteins and their implications for stability and folding.. Journal of molecular biology, 2007.
123. Tsai Y, Sawaya MR, Cannon GC, Cai F, Williams EB, Heinhorst S, Kerfeld CA, Yeates TO. Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome.. PLoS biology, 2007.
124. Boutz DR, Cascio D, Whitelegge J, Perry LJ, Yeates TO. Discovery of a thermophilic protein complex stabilized by topologically interlinked chains.. Journal of molecular biology, 2007.
125. Yeates TO. Protein structure: evolutionary bridges to new folds.. Current biology : CB, 2007.
126. Yeates TO, Beeby M. Biochemistry. Proteins in a small world.. Science (New York, N.Y.), 2006.
127. Banatao DR, Cascio D, Crowley CS, Fleissner MR, Tienson HL, Yeates TO. An approach to crystallizing proteins by synthetic symmetrization.. Proceedings of the National Academy of Sciences of the United States of America, 2006.
128. Laidman J, Forse GJ, Yeates TO. Conformational change and assembly through edge beta strands in transthyretin and other amyloid proteins.. Accounts of chemical research, 2006.
129. Norcross TS, Yeates TO. A framework for describing topological frustration in models of protein folding.. Journal of molecular biology, 2006.
130. Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA. The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two.. The Journal of biological chemistry, 2006.
131. Bowers PM, O'Connor BD, Cokus SJ, Sprinzak E, Yeates TO, Eisenberg D. Utilizing logical relationships in genomic data to decipher cellular processes.. The FEBS journal, 2005.
132. Kudryashov DS, Sawaya MR, Adisetiyo H, Norcross T, Hegyi G, Reisler E, Yeates TO. The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin.. Proceedings of the National Academy of Sciences of the United States of America, 2005.
133. Chaudhuri BN, Yeates TO. A computational method to predict genetically encoded rare amino acids in proteins.. Genome biology, 2005.
134. Beeby M, O'Connor BD, Ryttersgaard C, Boutz DR, Perry LJ, Yeates TO. The genomics of disulfide bonding and protein stabilization in thermophiles.. PLoS biology, 2005.
135. Kerfeld CA, Sawaya MR, Tanaka S, Nguyen CV, Phillips M, Beeby M, Yeates TO. Protein structures forming the shell of primitive bacterial organelles.. Science (New York, N.Y.), 2005.
136. Bowers PM, Cokus SJ, Eisenberg D, Yeates TO. Use of logic relationships to decipher protein network organization.. Science (New York, N.Y.), 2004.
137. O'Connor BD, Yeates TO. GDAP: a web tool for genome-wide protein disulfide bond prediction.. Nucleic acids research, 2004.
138. Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D. Prolinks: a database of protein functional linkages derived from coevolution.. Genome biology, 2004.
139. Chaudhuri BN, Chan S, Perry LJ, Yeates TO. Crystal structure of the apo forms of psi 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: a hinge at the base of the catalytic cleft.. The Journal of biological chemistry, 2004.
140. Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps.. Nucleic acids research, 2003.
141. Kerfeld CA, Sawaya MR, Bottin H, Tran KT, Sugiura M, Cascio D, Desbois A, Yeates TO, Kirilovsky D, Boussac A. Structural and EPR characterization of the soluble form of cytochrome c-550 and of the psbV2 gene product from the cyanobacterium Thermosynechococcus elongatus.. Plant & cell physiology, 2003.
142. Chaudhuri BN, Sawaya MR, Kim CY, Waldo GS, Park MS, Terwilliger TC, Yeates TO. The crystal structure of the first enzyme in the pantothenate biosynthetic pathway, ketopantoate hydroxymethyltransferase, from M tuberculosis.. Structure (London, England : 1993), 2003.
143. Padilla JE, Yeates TO. A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning.. Acta crystallographica. Section D, Biological crystallography, 2003.
144. Kerfeld CA, Yoshida S, Tran KT, Yeates TO, Cascio D, Bottin H, Berthomieu C, Sugiura M, Boussac A. The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus.. Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2003.
145. Elam JS, Taylor AB, Strange R, Antonyuk S, Doucette PA, Rodriguez JA, Hasnain SS, Hayward LJ, Valentine JS, Yeates TO, Hart PJ. Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS.. Nature structural biology, 2003.
146. Rudolph MG, Kelker MS, Schneider TR, Yeates TO, Oseroff V, Heidary DK, Jennings PA, Wilson IA. Use of multiple anomalous dispersion to phase highly merohedrally twinned crystals of interleukin-1beta.. Acta crystallographica. Section D, Biological crystallography, 2003.
147. Kerfeld CA, Sawaya MR, Brahmandam V, Cascio D, Ho KK, Trevithick-Sutton CC, Krogmann DW, Yeates TO. The crystal structure of a cyanobacterial water-soluble carotenoid binding protein.. Structure (London, England : 1993), 2003.
148. Serag AA, Altenbach C, Gingery M, Hubbell WL, Yeates TO. Arrangement of subunits and ordering of beta-strands in an amyloid sheet.. Nature structural biology, 2002.
149. Yeates TO, Padilla JE. Designing supramolecular protein assemblies.. Current opinion in structural biology, 2002.
150. Mallick P, Boutz DR, Eisenberg D, Yeates TO. Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds.. Proceedings of the National Academy of Sciences of the United States of America, 2002.
151. Kerfeld CA, Sawaya MR, Krogmann DW, Yeates TO. Structure of cytochrome c6 from Arthrospira maxima: an assembly of 24 subunits in a nearly symmetric shell.. Acta crystallographica. Section D, Biological crystallography, 2002.
152. Ryttersgaard C, Griffith SC, Sawaya MR, MacLaren DC, Clarke S, Yeates TO. Crystal structure of human L-isoaspartyl methyltransferase.. The Journal of biological chemistry, 2002.
153. Thapar N, Griffith SC, Yeates TO, Clarke S. Protein repair methyltransferase from the hyperthermophilic archaeon Pyrococcus furiosus. Unusual methyl-accepting affinity for D-aspartyl and N-succinyl-containing peptides.. The Journal of biological chemistry, 2001.
154. Yeates TO. [22] Detecting and overcoming crystal twinning.. Methods in enzymology, 1997.