Alex Anh-Tuan Bui
Professor, Radiological Sciences, University of California Los Angeles
buia@mii.ucla.edu
310-794-3540
Interests
Biomedical informatics, mHealth, Artificial intelligence in medicine
Education and Training
UCLA | PhD | 06/2000 | Computer Science |
UC Berkeley | BA | 05/1995 | Computer Science |
Publications
- Barnholtz-Sloan JS, Rollison DE, Basu A, Borowsky AD, Bui A, DiGiovanna J, Garcia-Closas M, Genkinger JM, Gerke T, Induni M, Lacey JV, Mirel L, Permuth JB, Saltz J, Shenkman EA, Ulrich CM, Zheng WJ, Nadaf S, Kibbe WA. Cancer Informatics for Cancer Centers (CI4CC): Building a Community Focused on Sharing Ideas and Best Practices to Improve Cancer Care and Patient Outcomes.. JCO clinical cancer informatics, 2020.
- Norris KC, Duru OK, Alicic RZ, Daratha KB, Nicholas SB, McPherson SM, Bell DS, Shen JI, Jones CR, Moin T, Waterman AD, Neumiller JJ, Vargas RB, Bui AAT, Mangione CM, Tuttle KR, CURE-CKD investigators. Rationale and design of a multicenter Chronic Kidney Disease (CKD) and at-risk for CKD electronic health records-based registry: CURE-CKD.. BMC nephrology, 2019.
- Goodman-Meza D, Weiss RE, Gamboa S, Gallegos A, Bui AAT, Goetz MB, Shoptaw S, Landovitz RJ. Long term surgical outcomes for infective endocarditis in people who inject drugs: a systematic review and meta-analysis.. BMC infectious diseases, 2019.
- Hosseini A, Zamanzadeh D, Valencia L, Habre R, Bui AAT, Sarrafzadeh M. Domain Adaptation in Children Activity Recognition.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2019.
- Ross MK, Okelo SO, Bui AAT. Towards Personalized and Comprehensive Pediatric Asthma Management: Understanding the Role of Social Determinants and Environmental Factors.. Academic pediatrics, 2019.
- Petousis P, Han SX, Hsu W, Bui AAT. Generating Reward Functions Using IRL Towards Individualized Cancer Screening.. Artificial intelligence in health : first International Workshop, AIH 2018, Stockholm, Sweden, July 13-14, 2018, Revised selected papers. AIH (Workshop) (1st : 2018 : Stockholm, Sweden), 2019.
- Li K, Habre R, Deng H, Urman R, Morrison J, Gilliland FD, Ambite JL, Stripelis D, Chiang YY, Lin Y, Bui AA, King C, Hosseini A, Vliet EV, Sarrafzadeh M, Eckel SP. Applying Multivariate Segmentation Methods to Human Activity Recognition From Wearable Sensors' Data.. JMIR mHealth and uHealth, 2019.
- Shen S, Han SX, Aberle DR, Bui AA, Hsu W. An Interpretable Deep Hierarchical Semantic Convolutional Neural Network for Lung Nodule Malignancy Classification.. Expert systems with applications, 2019.
- Caufield JH, Zhou Y, Garlid AO, Setty SP, Liem DA, Cao Q, Lee JM, Murali S, Spendlove S, Wang W, Zhang L, Sun Y, Bui A, Hermjakob H, Watson KE, Ping P. A reference set of curated biomedical data and metadata from clinical case reports.. Scientific data, 2018.
- Caufield JH, Liem DA, Garlid AO, Zhou Y, Watson K, Bui AAT, Wang W, Ping P. A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.. Journal of visualized experiments : JoVE, 2018.
- Hosseini A, Fazeli S, Vliet EV, Valencia L, Habre R, Sarrafzadeh M, Bui A. Children Activity Recognition: Challenges and Strategies.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2018.
- Bakir M, Jackson NJ, Han SX, Bui A, Chang E, Liem DA, Ardehali A, Ardehali R, Baas AS, Press MC, Cruz D, Deng MC, DePasquale EC, Fonarow GC, Khuu T, Kwon MH, Kubak BM, Nsair A, Phung JL, Reed EF, Schaenman JM, Shemin RJ, Zhang QJ, Tseng CH, Cadeiras M. Clinical phenomapping and outcomes after heart transplantation.. The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation, 2018.
- Luo Y, Abiri P, Zhang S, Chang CC, Kaboodrangi AH, Li R, Sahib AK, Bui A, Kumar R, Woo M, Li Z, Packard RRS, Tai YC, Hsiai TK. Non-Invasive Electrical Impedance Tomography for Multi-Scale Detection of Liver Fat Content.. Theranostics, 2018.
- Garcia-Gathright JI, Matiasz NJ, Adame C, Sarma KV, Sauer L, Smedley NF, Spiegel ML, Strunck J, Garon EB, Taira RK, Aberle DR, Bui AAT. Evaluating Casama: Contextualized semantic maps for summarization of lung cancer studies.. Computers in biology and medicine, 2017.
- Hosseini A, Buonocore CM, Hashemzadeh S, Hojaiji H, Kalantarian H, Sideris C, Bui AAT, King CE, Sarrafzadeh M. Feasibility of a Secure Wireless Sensing Smartwatch Application for the Self-Management of Pediatric Asthma.. Sensors (Basel, Switzerland), 2017.
- Jagodnik KM, Koplev S, Jenkins SL, Ohno-Machado L, Paten B, Schurer SC, Dumontier M, Verborgh R, Bui A, Ping P, McKenna NJ, Madduri R, Pillai A, Ma'ayan A. Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.. Journal of biomedical informatics, 2017.
- Hojaiji H, Kalantarian H, Bui AAT, King CE, Sarrafzadeh M. Temperature and Humidity Calibration of a Low-Cost Wireless Dust Sensor for Real-Time Monitoring.. 2017 IEEE Sensors Applications Symposium (SAS). IEEE Staff, 2017.
- Ping P, Watson K, Han J, Bui A. Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine.. Circulation research, 2017.
- Bui AAT, Van Horn JD, NIH BD2K Centers Consortium. Envisioning the future of 'big data' biomedicine.. Journal of biomedical informatics, 2017.
- Shen S, Han SX, Petousis P, Weiss RE, Meng F, Bui AA, Hsu W. A Bayesian model for estimating multi-state disease progression.. Computers in biology and medicine, 2016.
- Petousis P, Han SX, Aberle D, Bui AA. Prediction of lung cancer incidence on the low-dose computed tomography arm of the National Lung Screening Trial: A dynamic Bayesian network.. Artificial intelligence in medicine, 2016.
- Hosseini A, Buonocore CM, Hashemzadeh S, Hojaiji H, Kalantarian H, Sideris C, Bui AAT, King CE, Sarrafzadeh M. HIPAA Compliant Wireless Sensing Smartwatch Application for the Self-Management of Pediatric Asthma.. ... International Conference on Wearable and Implantable Body Sensor Networks. International Conference on Wearable and Implantable Body Sensor Networks, 2016.
- Zide M, Caswell K, Peterson E, Aberle DR, Bui AA, Arnold CW. Consumers' Patient Portal Preferences and Health Literacy: A Survey Using Crowdsourcing.. JMIR research protocols, 2016.
- Rios Piedra EA, Taira RK, El-Saden S, Ellingson BM, Bui AAT, Hsu W. Assessing Variability in Brain Tumor Segmentation to Improve Volumetric Accuracy and Characterization of Change.. ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics, 2016.
- Garcia-Gathright JI, Matiasz NJ, Garon EB, Aberle DR, Taira RK, Bui AAT. Toward patient-tailored summarization of lung cancer literature.. ... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics, 2016.
- Katrib A, Hsu W, Bui A, Xing Y. "RADIOTRANSCRIPTOMICS": A synergy of imaging and transcriptomics in clinical assessment.. Quantitative biology (Beijing, China), 2016.
- Hsu W, Han SX, Arnold CW, Bui AA, Enzmann DR. A data-driven approach for quality assessment of radiologic interpretations.. Journal of the American Medical Informatics Association : JAMIA, 2015.
- Woodbridge J, Mortazavi B, Bui AA, Sarrafzadeh M. Improving Biomedical Signal Search Results in Big Data Case-Based Reasoning Environments.. Pervasive and mobile computing, 2015.
- Nikkola E, Laiwalla A, Ko A, Alvarez M, Connolly M, Ooi YC, Hsu W, Bui A, Pajukanta P, Gonzalez NR. Remote Ischemic Conditioning Alters Methylation and Expression of Cell Cycle Genes in Aneurysmal Subarachnoid Hemorrhage.. Stroke, 2015.
- McNamara M, Arnold C, Sarma K, Aberle D, Garon E, Bui AA. Patient Portal Preferences: Perspectives on Imaging Information.. Journal of the Association for Information Science and Technology, 2015.
- Hsu W, Gonzalez NR, Chien A, Pablo Villablanca J, Pajukanta P, Viñuela F, Bui AA. An integrated, ontology-driven approach to constructing observational databases for research.. Journal of biomedical informatics, 2015.
- Garcia-Gathright JI, Oh A, Abarca PA, Han M, Sago W, Spiegel ML, Wolf B, Garon EB, Bui AA, Aberle DR. Representing and extracting lung cancer study metadata: study objective and study design.. Computers in biology and medicine, 2015.
- Shen S, Bui AA, Cong J, Hsu W. An automated lung segmentation approach using bidirectional chain codes to improve nodule detection accuracy.. Computers in biology and medicine, 2014.
- McNamara M, Sarma K, Aberle DR, Bui AA, Arnold C. Data model for personalized patient health guidelines: an exploratory study.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2014.
- Singleton KW, Speier W, Bui AA, Hsu W. Motivating the additional use of external validity: examining transportability in a model of glioblastoma multiforme.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2014.
- Ho KC, Speier W, El-Saden S, Liebeskind DS, Saver JL, Bui AA, Arnold CW. Predicting discharge mortality after acute ischemic stroke using balanced data.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2014.
- Singleton KW, Bui AA, Hsu W. Transfer and transport: incorporating causal methods for improving predictive models.. Journal of the American Medical Informatics Association : JAMIA, 2014.
- Hsu W, Bui AA. Leveraging domain knowledge to facilitate visual exploration of large population datasets.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2013.
- Bui AA, Hsu W, Arnold C, El-Saden S, Aberle DR, Taira RK. Imaging-based observational databases for clinical problem solving: the role of informatics.. Journal of the American Medical Informatics Association : JAMIA, 2013.
- Arnold CW, McNamara M, El-Saden S, Chen S, Taira RK, Bui AA. Imaging informatics for consumer health: towards a radiology patient portal.. Journal of the American Medical Informatics Association : JAMIA, 2013.
- Love A, Arnold CW, El-Saden S, Liebeskind DS, Andrada L, Saver J, Bui AA. Unifying acute stroke treatment guidelines for a Bayesian belief network.. Studies in health technology and informatics, 2013.
- Woodbridge J, Mortazavi B, Sarrafzadeh M, Bui AA. A Monte Carlo Approach to Biomedical Time Series Search.. Proceedings. IEEE International Conference on Bioinformatics and Biomedicine, 2012.
- Woodbridge J, Mortazavi B, Sarrafzadeh M, Bui AA. Aggregated Indexing of Biomedical Time Series Data.. Proceedings. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, 2012.
- Wu JA, Hsu W, Bui AA. An Approach for Incorporating Context in Building Probabilistic Predictive Models.. Proceedings. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, 2012.
- Suh MK, Woodbridge J, Moin T, Lan M, Alshurafa N, Samy L, Mortazavi B, Ghasemzadeh H, Bui A, Ahmadi S, Sarrafzadeh M. Dynamic Task Optimization in Remote Diabetes Monitoring Systems.. Proceedings. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, 2012.
- Singleton KW, Hsu W, Bui AA. Comparing predictive models of glioblastoma multiforme built using multi-institutional and local data sources.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2012.
- Au LK, Bui AA, Batalin MA, Kaiser WJ. Energy-efficient context classification with dynamic sensor control.. IEEE transactions on biomedical circuits and systems, 2012.
- Hsu W, Taira RK, El-Saden S, Kangarloo H, Bui AA. Context-based electronic health record: toward patient specific healthcare.. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, 2012.
- Suh MK, Moin T, Woodbridge J, Lan M, Ghasemzadeh H, Bui A, Ahmadi S, Sarrafzadeh M. Dynamic self-adaptive remote health monitoring system for diabetics.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2012.
- Woodbridge J, Mortazavi B, Bui AA, Sarrafzadeh M. High performance biomedical time series indexes using salient segmentation.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2012.
- Watt E, Sayre JW, Bui AA. Applying an Instance-specific Model to Longitudinal Clinical Data for Prediction.. Proceedings. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, 2011.
- Singleton KW, Lan M, Arnold C, Vahidi M, Arangua L, Gelberg L, Bui AA. Wireless data collection of self-administered surveys using tablet computers.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2011.
- Hsu W, Taira RK, Viñuela F, Bui AA. A Case-based Retrieval System using Natural Language Processing and Population-based Visualization.. Proceedings. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, 2011.
- Woodbridge J, Lan M, Sarrafzadeh M, Bui A. Salient Segmentation of Medical Time Series Signals.. Proceedings. IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology, 2011.
- Au LK, Bui AA, Batalin MA, Xu X, Kaiser WJ. CARER: efficient dynamic sensing for continuous activity monitoring.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2011.
- Suh MK, Woodbridge J, Lan M, Bui A, Evangelista LS, Sarrafzadeh M. Missing data imputation for remote CHF patient monitoring systems.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2011.
- Arnold CW, El-Saden SM, Bui AA, Taira R. Clinical Case-based Retrieval Using Latent Topic Analysis.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2010.
- Woodbridge J, Bui A, Sarrafzadeh M. Linear Frequency Estimation Technique for Reducing Frequency Based Signals.. The ... International Conference on PErvasive Technologies Related to Assistive Environments : PETRA ... International Conference on PErvasive Technologies Related to Assistive Environments, 2010.
- Sarraf D, Vyas N, Jain A, Bui A, Kertes PJ, Freund KB, Chan C. Triamcinolone-associated crystalline maculopathy.. Archives of ophthalmology (Chicago, Ill. : 1960), 2010.
- Iglesias JE, Rocks K, Jahanshad N, Frias-Martinez E, Andrada LP, Bui AA. Tracking medication information across medical records.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2009.
- Bashyam V, Hsu W, Watt E, Bui AA, Kangarloo H, Taira RK. Problem-centric organization and visualization of patient imaging and clinical data.. Radiographics : a review publication of the Radiological Society of North America, Inc, 2009.
- Au LK, Batalin MA, Stathopoulos T, Bui AA, Kaiser WJ. Episodic sampling: towards energy-efficient patient monitoring with wearable sensors.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2009.
- Wender JD, Johnson RN, Roe RH, Bui AT, Cunningham ET, Fu AD, Jumper JM, McDonald HR. Resolution of a giant pigment epithelial detachment after treatment with intravitreal bevacizumab.. Retinal cases & brief reports, 2009.
- Taira RK, Taira R, Bui A, Bui AA, Hsu W, Bashyam V, Dube S, Watt E, Andrada L, El-Saden S, Cloughesy T, Kangarloo H. A tool for improving the longitudinal imaging characterization for neuro-oncology cases.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2008.
- Watt EW, Watt E, Bui AA, Bui AA. Evaluation of a dynamic bayesian belief network to predict osteoarthritic knee pain using data from the osteoarthritis initiative.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2008.
- Morioka CA, El-Saden S, Pope W, Sayre J, Duckwiler G, Meng F, Bui A, Kangarloo H. A methodology to integrate clinical data for the efficient assessment of brain-tumor patients.. Informatics for health & social care, 2008.
- D'Avolio LW, Litwin MS, Rogers SO, Bui AA. Facilitating Clinical Outcomes Assessment through the automated identification of quality measures for prostate cancer surgery.. Journal of the American Medical Informatics Association : JAMIA, 2008.
- D'Avolio LW, Bui AA. The Clinical Outcomes Assessment Toolkit: a framework to support automated clinical records-based outcomes assessment and performance measurement research.. Journal of the American Medical Informatics Association : JAMIA, 2008.
- Wu WH, Bui AA, Batalin MA, Au LK, Binney JD, Kaiser WJ. MEDIC: medical embedded device for individualized care.. Artificial intelligence in medicine, 2008.
- D'Avolio LW, Litwin MS, Rogers SO, Bui AA. Automatic identification and classification of surgical margin status from pathology reports following prostate cancer surgery.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2007.
- Wu WH, Bui AA, Batalin MA, Liu D, Kaiser WJ. Incremental diagnosis method for intelligent wearable sensor systems.. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, 2007.
- Arnold CW, Bui AA, Morioka C, El-Saden S, Kangarloo H. Informatics in radiology: A prototype Web-based reporting system for onsite-offsite clinician communication.. Radiographics : a review publication of the Radiological Society of North America, Inc, 2007.
- Bui AA, Aberle DR, Kangarloo H. TimeLine: visualizing integrated patient records.. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, 2007.
- Wu WH, Batalin MA, Au LK, Bui AA, Kaiser WJ. Context-aware sensing of physiological signals.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2007.
- Bui AA, Morioka C, Dionisio JD, Johnson DB, Sinha U, Ardekani S, Taira RK, Aberle DR, El-Saden S, Kangarloo H. OpenSourcePACS: an extensible infrastructure for medical image management.. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, 2007.
- Morioka C, Dionisio JD, Bui A, El-Saden S, Kangarloo H. StructConsult: structured real-time wet read consultation infrastructure to support patient care.. Studies in health technology and informatics, 2007.
- Reddy S, Finger PT, Kurli M, Bui A, Iacob CE. Conjunctival malignant melanoma-associated pseudomelanoma of the apposing tarsal conjunctiva.. Cornea, 2006.
- Hsu W, Bui AA. A framework for visually querying a probabilistic model of tumor image features.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2006.
- Meng F, Taira RK, Bui AA, Kangarloo H, Churchill BM. Automatic generation of repeated patient information for tailoring clinical notes.. International journal of medical informatics, 2005.
- Bui AA, Taira RK, El-Saden S, Dordoni A, Aberle DR. Automated medical problem list generation: towards a patient timeline.. Studies in health technology and informatics, 2004.
- Meng F, Taira RK, Bui AA, Kangarloo H, Churchill BM. Automatic generation of repeated patient information for tailoring clinical notes.. Studies in health technology and informatics, 2004.
- Bui AA, Taira RK, Goldman D, Dionisio JD, Aberle DR, El-Saden S, Sayre J, Rice T, Kangarloo H. Effect of an imaging-based streamlined electronic healthcare process on quality and costs.. Academic radiology, 2004.
- Gordon S, Bui A. Human skin equivalent in the treatment of chronic leg ulcers in sickle cell disease patients.. Journal of the American Podiatric Medical Association, 2003.
- Morioka CA, El-Saden S, Duckwiler G, Zou Q, Ying R, Bui A, Johnson D, Kangarloo H. Workflow management of HIS/RIS textual documents with PACS image studies for neuroradiology.. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2003.
- Sinha U, Bui A, Taira R, Dionisio J, Morioka C, Johnson D, Kangarloo H. A review of medical imaging informatics.. Annals of the New York Academy of Sciences, 2002.
- Bui AA, Weinger GS, Barretta SJ, Dionisio JD, Kangarloo H. An XML Gateway to Patient Data for Medical Research Applications.. Annals of the New York Academy of Sciences, 2002.
- Bui AA, Dionisio JD, Morioka CA, Sinha U, Taira RK, Kangarloo H. DataServer: an infrastructure to support evidence-based radiology.. Academic radiology, 2002.
- Bui AA, Taira RK, Dionisio JD, Aberle DR, El-Saden S, Kangarloo H. Evidence-based radiology: requirements for electronic access.. Academic radiology, 2002.
- Son RY, Taira RK, Bui AA, Kangarloo H, Cardenas AF. A context-sensitive methodology for automatic episode creation.. Proceedings. AMIA Symposium, 2002.
- Taira RK, Bui AA, Kangarloo H. Identification of patient name references within medical documents using semantic selectional restrictions.. Proceedings. AMIA Symposium, 2002.