Publications

• Joshi AA, Choi S, Liu Y, Chong M, Sonkar G, Gonzalez-Martinez J, Nair D, Wisnowski JL, Haldar JP, Shattuck DW, Damasio H, Leahy RM. A hybrid high-resolution anatomical MRI atlas with sub-parcellation of cortical gyri using resting fMRI.. Journal of neuroscience methods, 2022.
• Cain JA, Visagan S, Johnson MA, Crone J, Blades R, Spivak NM, Shattuck DW, Monti MM. Real time and delayed effects of subcortical low intensity focused ultrasound.. Scientific reports, 2021.
• Kuhn T, Jin Y, Huang C, Kim Y, Nir TM, Gullett JM, Jones JD, Sayegh P, Chung C, Dang BH, Singer EJ, Shattuck DW, Jahanshad N, Bookheimer SY, Hinkin CH, Zhu H, Thompson PM, Thames AD. The joint effect of aging and HIV infection on microstructure of white matter bundles.. Human brain mapping, 2019.
• Shattuck DW. Multiuser virtual reality environment for visualising neuroimaging data.. Healthcare technology letters, 2018.
• Joshi AA, Bhushan C, Salloum R, Wisnowski J, Shattuck DW, Leahy RM. Using the Anisotropic Laplace Equation to Compute Cortical Thickness.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 2018.
• Quachtran B, de la Torre Ubieta L, Yusupova M, Geschwind DH, Shattuck DW. VOTING-BASED SEGMENTATION OF OVERLAPPING NUCLEI IN CLARITY IMAGES.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2018.
• Phillips OR, Joshi SH, Narr KL, Shattuck DW, Singh M, Di Paola M, Ploner CJ, Prüss H, Paul F, Finke C. Superficial white matter damage in anti-NMDA receptor encephalitis.. Journal of neurology, neurosurgery, and psychiatry, 2017.
• Chong M, Bhushan C, Joshi AA, Choi S, Haldar JP, Shattuck DW, Spreng RN, Leahy RM. Individual parcellation of resting fMRI with a group functional connectivity prior.. NeuroImage, 2017.
• Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa AN, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, Pediatric Imaging, Neurocognition and Genetics Study, Jones SE. Automated MRI Volumetric Analysis in Patients with Rasmussen Syndrome.. AJNR. American journal of neuroradiology, 2016.
• Phillips OR, Joshi SH, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck DW, Caltagirone C, Sabatini U, Di Paola M. Major Superficial White Matter Abnormalities in Huntington's Disease.. Frontiers in neuroscience, 2016.
• Phillips OR, Joshi SH, Piras F, Orfei MD, Iorio M, Narr KL, Shattuck DW, Caltagirone C, Spalletta G, Di Paola M. The superficial white matter in Alzheimer's disease.. Human brain mapping, 2016.
• Marusak HA, Furman DJ, Kuruvadi N, Shattuck DW, Joshi SH, Joshi AA, Etkin A, Thomason ME. Amygdala responses to salient social cues vary with oxytocin receptor genotype in youth.. Neuropsychologia, 2015.
• Marusak HA, Kuruvadi N, Vila AM, Shattuck DW, Joshi SH, Joshi AA, Jella PK, Thomason ME. Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood.. European child & adolescent psychiatry, 2015.
• Wei M, Joshi AA, Zhang M, Mei L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW, Leahy RM, Xue F, Houston SM, Chen C, Dong Q, Lu ZL. How age of acquisition influences brain architecture in bilinguals.. Journal of neurolinguistics, 2015.
• Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW. CORRECTING INHOMOGENEITY-INDUCED DISTORTION IN FMRI USING NON-RIGID REGISTRATION.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2015.
• Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, Leahy RM. Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization.. NeuroImage, 2015.
• Habibi A, Ilari B, Crimi K, Metke M, Kaplan JT, Joshi AA, Leahy RM, Shattuck DW, Choi SY, Haldar JP, Ficek B, Damasio A, Damasio H. An equal start: absence of group differences in cognitive, social, and neural measures prior to music or sports training in children.. Frontiers in human neuroscience, 2014.
• Luders E, S?nchez FJ, Tosun D, Shattuck DW, Gaser C, Vilain E, Toga AW. Increased Cortical Thickness in Male-to-Female Transsexualism.. Journal of behavioral and brain science, 2012.
• Joshi AA, Shattuck DW, Leahy RM. A Method for Automated Cortical Surface Registration and Labeling.. Biomedical image registration, ... proceedings. WBIR (Workshop : 2006- ), 2012.
• Toga AW, Clark KA, Thompson PM, Shattuck DW, Van Horn JD. Mapping the human connectome.. Neurosurgery, 2012.
• Joshi AA, Shattuck DW, Damasio H, Leahy RM. GEODESIC CURVATURE FLOW ON SURFACES FOR AUTOMATIC SULCAL DELINEATION.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2012.
• Wheland D, Joshi AA, McMahon KL, Hansell NK, Martin NG, Wright MJ, Thompson PM, Shattuck DW, Leahy RM. Robust Identification of Partial-Correlation Based Networks with Applications to Cortical Thickness Data.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2012.
• Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM. An invariant shape representation using the anisotropic Helmholtz equation.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 2012.
• Toga AW, Dinov ID, Thompson PM, Woods RP, Van Horn JD, Shattuck DW, Parker DS. The Center for Computational Biology: resources, achievements, and challenges.. Journal of the American Medical Informatics Association : JAMIA, 2011.
• Prasad G, Joshi AA, Thompson PM, Toga AW, Shattuck DW, Terzopoulos D. SKULL-STRIPPING WITH DEFORMABLE ORGANISMS.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2011.
• Joshi AA, Chaudhari AJ, Li C, Dutta J, Cherry SR, Shattuck DW, Toga AW, Leahy RM. DigiWarp: a method for deformable mouse atlas warping to surface topographic data.. Physics in medicine and biology, 2010.
• Tohka J, Dinov ID, Shattuck DW, Toga AW. Brain MRI tissue classification based on local Markov random fields.. Magnetic resonance imaging, 2010.
• Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck DW, Toga AW, Leahy RM. Sulcal set optimization for cortical surface registration.. NeuroImage, 2010.
• Pantazis D, Joshi A, Jiang J, Shattuck DW, Bernstein LE, Damasio H, Leahy RM. Comparison of landmark-based and automatic methods for cortical surface registration.. NeuroImage, 2009.
• Joshi AA, Chaudhari AJ, Li C, Shattuck DW, Dutta J, Leahy RM, Toga AW. POSTURE MATCHING AND ELASTIC REGISTRATION OF A MOUSE ATLAS TO SURFACE TOPOGRAPHY RANGE DATA.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2009.
• Joshi A, Pantazis D, Damasio H, Shattuck D, Li Q, Leahy R. Optimization of Landmark Selection for Cortical Surface Registration.. Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2009.
• Joshi AA, Shattuck DW, Thompson PM, Leahy RM. A parameterization-based numerical method for isotropic and anisotropic diffusion smoothing on non-flat surfaces.. IEEE transactions on image processing : a publication of the IEEE Signal Processing Society, 2009.
• Hageman NS, Toga AW, Narr KL, Shattuck DW. A diffusion tensor imaging tractography algorithm based on Navier-Stokes fluid mechanics.. IEEE transactions on medical imaging, 2009.
• Chiang MC, Barysheva M, Shattuck DW, Lee AD, Madsen SK, Avedissian C, Klunder AD, Toga AW, McMahon KL, de Zubicaray GI, Wright MJ, Srivastava A, Balov N, Thompson PM. Genetics of brain fiber architecture and intellectual performance.. The Journal of neuroscience : the official journal of the Society for Neuroscience, 2009.
• Eckstein I, Shattuck DW, Stein JL, McMahon KL, de Zubicaray G, Wright MJ, Thompson PM, Toga AW. Active fibers: matching deformable tract templates to diffusion tensor images.. NeuroImage, 2009.
• Joshi A, Leahy R, Toga AW, Shattuck D. A framework for brain registration via simultaneous surface and volume flow.. Information processing in medical imaging : proceedings of the ... conference, 2009.
• Shattuck DW, Joshi AA, Pantazis D, Kan E, Dutton RA, Sowell ER, Thompson PM, Toga AW, Leahy RM. Semi-automated method for delineation of landmarks on models of the cerebral cortex.. Journal of neuroscience methods, 2008.
• Narr KL, Hageman N, Woods RP, Hamilton LS, Clark K, Phillips O, Shattuck DW, Asarnow RF, Toga AW, Nuechterlein KH. Mean diffusivity: a biomarker for CSF-related disease and genetic liability effects in schizophrenia.. Psychiatry research, 2008.
• de Zubicaray GI, Chiang MC, McMahon KL, Shattuck DW, Toga AW, Martin NG, Wright MJ, Thompson PM. Meeting the Challenges of Neuroimaging Genetics.. Brain imaging and behavior, 2008.
• Shattuck DW, Prasad G, Mirza M, Narr KL, Toga AW. Online resource for validation of brain segmentation methods.. NeuroImage, 2008.
• Shattuck DW, Chiang MC, Barysheva M, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM. Visualization tools for high angular resolution diffusion imaging.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 2008.
• Joshi AA, Shattuck DW, Thompson PM, Leahy RM. Surface-constrained volumetric brain registration using harmonic mappings.. IEEE transactions on medical imaging, 2007.
• Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW. Construction of a 3D probabilistic atlas of human cortical structures.. NeuroImage, 2007.
• Joshi AA, Shattuck DW, Thompson PM, Leahy RM. Registration of cortical surfaces using sulcal landmarks for group analysis of MEG data.. International congress series, 2007.
• Tohka J, Krestyannikov E, Dinov ID, Graham AM, Shattuck DW, Ruotsalainen U, Toga AW. Genetic algorithms for finite mixture model based voxel classification in neuroimaging.. IEEE transactions on medical imaging, 2007.
• Sicotte NL, Giesser BS, Tandon V, Klutch R, Steiner B, Drain AE, Shattuck DW, Hull L, Wang HJ, Elashoff RM, Swerdloff RS, Voskuhl RR. Testosterone treatment in multiple sclerosis: a pilot study.. Archives of neurology, 2007.
• Joshi A, Shattuck D, Thompson P, Leahy R. Brain image registration using cortically constrained harmonic mappings.. Information processing in medical imaging : proceedings of the ... conference, 2007.
• Sicotte NL, Salamon G, Shattuck DW, Hageman N, Rüb U, Salamon N, Drain AE, Demer JL, Engle EC, Alger JR, Baloh RW, Deller T, Jen JC. Diffusion tensor MRI shows abnormal brainstem crossing fibers associated with ROBO3 mutations.. Neurology, 2006.
• MacKenzie-Graham A, Tinsley MR, Shah KP, Aguilar C, Strickland LV, Boline J, Martin M, Morales L, Shattuck DW, Jacobs RE, Voskuhl RR, Toga AW. Cerebellar cortical atrophy in experimental autoimmune encephalomyelitis.. NeuroImage, 2006.
• Dinov ID, Valentino D, Shin BC, Konstantinidis F, Hu G, MacKenzie-Graham A, Lee EF, Shattuck D, Ma J, Schwartz C, Toga AW. LONI visualization environment.. Journal of digital imaging, 2006.
• Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location.. Human brain mapping, 2006.
• Dogdas B, Shattuck DW, Leahy RM. Segmentation of skull and scalp in 3-D human MRI using mathematical morphology.. Human brain mapping, 2005.
• Salamon N, Sicotte N, Mongkolwat P, Shattuck D, Salamon G. The human cerebral cortex on MRI: value of the coronal plane.. Surgical and radiologic anatomy : SRA, 2005.
• Salamon N, Sicotte N, Alger J, Shattuck D, Perlman S, Sinha U, Schultze-Haakh H, Salamon G. Analysis of the brain-stem white-matter tracts with diffusion tensor imaging.. Neuroradiology, 2005.
• Joshi AA, Shattuck DW, Thompson PM, Leahy RM. A framework for registration, statistical characterization and classification of cortically constrained functional imaging data.. Information processing in medical imaging : proceedings of the ... conference, 2005.
• Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stoltzner SE, Stolzner SE, Rottenberg DA, Toga AW. A meta-algorithm for brain extraction in MRI.. NeuroImage, 2004.
• Jen JC, Chan WM, Bosley TM, Wan J, Carr JR, Rüb U, Shattuck D, Salamon G, Kudo LC, Ou J, Lin DD, Salih MA, Kansu T, Al Dhalaan H, Al Zayed Z, MacDonald DB, Stigsby B, Plaitakis A, Dretakis EK, Gottlob I, Pieh C, Traboulsi EI, Wang Q, Wang L, Andrews C, Yamada K, Demer JL, Karim S, Alger JR, Geschwind DH, Deller T, Sicotte NL, Nelson SF, Baloh RW, Engle EC. Mutations in a human ROBO gene disrupt hindbrain axon pathway crossing and morphogenesis.. Science (New York, N.Y.), 2004.
• Joshi AA, Shattuck DW, Thompson PM, Leahy RM. CORTICAL SURFACE PARAMETERIZATION BY P-HARMONIC ENERGY MINIMIZATION.. Proceedings. IEEE International Symposium on Biomedical Imaging, 2004.
• MacKenzie-Graham A, Lee EF, Dinov ID, Bota M, Shattuck DW, Ruffins S, Yuan H, Konstantinidis F, Pitiot A, Ding Y, Hu G, Jacobs RE, Toga AW. A multimodal, multidimensional atlas of the C57BL/6J mouse brain.. Journal of anatomy, 2004.
• MacKenzie-Graham A, Jones ES, Shattuck DW, Dinov ID, Bota M, Toga AW. The informatics of a C57BL/6J mouse brain atlas.. Neuroinformatics, 2003.
• Shattuck DW, Rapela J, Asma E, Chatzioannou A, Qi J, Leahy RM. Internet2-based 3D PET image reconstruction using a PC cluster.. Physics in medicine and biology, 2002.
• Shattuck DW, Leahy RM. BrainSuite: an automated cortical surface identification tool.. Medical image analysis, 2002.
• Shattuck DW, Leahy RM. Automated graph-based analysis and correction of cortical volume topology.. IEEE transactions on medical imaging, 2001.
• Hunt SC, Abkevich V, Hensel CH, Gutin A, Neff CD, Russell DL, Tran T, Hong X, Jammulapati S, Riley R, Weaver-Feldhaus J, Macalma T, Richards MM, Gress R, Francis M, Thomas A, Frech GC, Adams TD, Shattuck D, Stone S. Linkage of body mass index to chromosome 20 in Utah pedigrees.. Human genetics, 2001.
• Shattuck DW, Sandor-Leahy SR, Schaper KA, Rottenberg DA, Leahy RM. Magnetic resonance image tissue classification using a partial volume model.. NeuroImage, 2001.
• Arnold JB, Liow JS, Schaper KA, Stern JJ, Sled JG, Shattuck DW, Worth AJ, Cohen MS, Leahy RM, Mazziotta JC, Rottenberg DA. Qualitative and quantitative evaluation of six algorithms for correcting intensity nonuniformity effects.. NeuroImage, 2001.