Publications

1. Yudovich S, Posnjak G, Shani L, Teblum E, Liedl T, Enderlein J, Weiss S. Scattering-based super-resolution optical fluctuation imaging.. Optics express, 2025.
2. Roy D, Michalet X, Miller EW, Bharadwaj K, Weiss S. Toward measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime.. Biophysical reports, 2025.
3. Roy D, Michalet X, Miller EW, Bharadwaj K, Weiss S. Towards measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime.. bioRxiv : the preprint server for biology, 2024.
4. Marzouq A, Morgenstein L, Huang-Zhu CA, Yudovich S, Atkins A, Grupi A, Van Lehn RC, Weiss S. Long-Chain Lipids Facilitate Insertion of Large Nanoparticles into Membranes of Small Unilamellar Vesicles.. Langmuir : the ACS journal of surfaces and colloids, 2024.
5. Cho H, Liu Y, Chung S, Chandrasekar S, Weiss S, Shan SO. Dynamic stability of Sgt2 enables selective and privileged client handover in a chaperone triad.. Nature communications, 2024.
6. Michalet X, Ulku AC, Wayne MA, Weiss S, Bruschini C, Charbon E. NIR Fluorescence lifetime macroscopic imaging with a novel time-gated SPAD camera.. Proceedings of SPIE--the International Society for Optical Engineering, 2023.
7. Agam G, Gebhardt C, Popara M, Mächtel R, Folz J, Ambrose B, Chamachi N, Chung SY, Craggs TD, de Boer M, Grohmann D, Ha T, Hartmann A, Hendrix J, Hirschfeld V, Hübner CG, Hugel T, Kammerer D, Kang HS, Kapanidis AN, Krainer G, Kramm K, Lemke EA, Lerner E, Margeat E, Martens K, Michaelis J, Mitra J, Moya Muñoz GG, Quast RB, Robb NC, Sattler M, Schlierf M, Schneider J, Schröder T, Sefer A, Tan PS, Thurn J, Tinnefeld P, van Noort J, Weiss S, Wendler N, Zijlstra N, Barth A, Seidel CAM, Lamb DC, Cordes T. Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins.. Nature methods, 2023.
8. Ghosh S, Ross U, Chizhik AM, Kuo Y, Jeong BG, Bae WK, Park K, Li J, Oron D, Weiss S, Enderlein J, Chizhik AI. Excitation Intensity-Dependent Quantum Yield of Semiconductor Nanocrystals.. The journal of physical chemistry letters, 2023.
9. Ingargiola A, Weiss S, Lerner E. Correction to "Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET".. The journal of physical chemistry. B, 2023.
10. Basu A, Paul MK, Weiss S. The actin cytoskeleton: Morphological changes in pre- and fully developed lung cancer.. Biophysics reviews, 2022.
11. Yudovich S, Marzouqe A, Kantorovitsch J, Teblum E, Chen T, Enderlein J, Miller EW, Weiss S. Electrically controlling and optically observing the membrane potential of supported lipid bilayers.. Biophysical journal, 2022.
12. Smith JT, Rudkouskaya A, Gao S, Gupta JM, Ulku A, Bruschini C, Charbon E, Weiss S, Barroso M, Intes X, Michalet X. In vitro and in vivo NIR fluorescence lifetime imaging with a time-gated SPAD camera.. Optica, 2022.
13. Basu A, Paul MK, Alioscha-Perez M, Grosberg A, Sahli H, Dubinett SM, Weiss S. Statistical parametrization of cell cytoskeleton reveals lung cancer cytoskeletal phenotype with partial EMT signature.. Communications biology, 2022.
14. Miao Y, Weiss S, Yi X. PySOFI: an open source Python package for SOFI.. Biophysical reports, 2022.
15. Ferschweiler D, Segal M, Weiss S, Michalet X. A user-friendly tool to convert photon counting data to the open-source Photon-HDF5 file format.. Proceedings of SPIE--the International Society for Optical Engineering, 2022.
16. Roy D, Shapira Z, Weiss S. Membrane potential sensing: Material design and method development for single particle optical electrophysiology.. The Journal of chemical physics, 2022.
17. Harris PD, Narducci A, Gebhardt C, Cordes T, Weiss S, Lerner E. Multi-parameter photon-by-photon hidden Markov modeling.. Nature communications, 2022.
18. Shapira Z, Degani-Katzav N, Yudovich S, Grupi A, Weiss S. Optical probing of local membrane potential with fluorescent polystyrene beads.. Biophysical reports, 2021.
19. Chio US, Liu Y, Chung S, Shim WJ, Chandrasekar S, Weiss S, Shan SO. Subunit cooperation in the Get1/2 receptor promotes tail-anchored membrane protein insertion.. The Journal of cell biology, 2021.
20. Grupi A, Shapira Z, Yudovich S, Degani-Katzav N, Weiss S. Point-localized, site-specific membrane potential optical recording by single fluorescent nanodiscs.. Biophysical reports, 2021.
21. Sehayek S, Yi X, Weiss S, Wiseman PW. Rapid ensemble measurement of protein diffusion and probe blinking dynamics in cells.. Biophysical reports, 2021.
22. Ghosh S, Nataraj NB, Noronha A, Patkar S, Sekar A, Mukherjee S, Winograd-Katz S, Kramarski L, Verma A, Lindzen M, Garcia DD, Green J, Eisenberg G, Gil-Henn H, Basu A, Lender Y, Weiss S, Oren M, Lotem M, Geiger B, Ruppin E, Yarden Y. PD-L1 recruits phospholipase C and enhances tumorigenicity of lung tumors harboring mutant forms of EGFR.. Cell reports, 2021.
23. Lee JH, Jomaa A, Chung S, Hwang Fu YH, Qian R, Sun X, Hsieh HH, Chandrasekar S, Bi X, Mattei S, Boehringer D, Weiss S, Ban N, Shan SO. Receptor compaction and GTPase rearrangement drive SRP-mediated cotranslational protein translocation into the ER.. Science advances, 2021.
24. Adler D, Shapira Z, Weiss S, Shainberg A, Katz A. Weak Electromagnetic Fields Accelerate Fusion of Myoblasts.. International journal of molecular sciences, 2021.
25. Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Chung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, Ha T, Hanke CA, Haran G, Hatzakis NS, Hohng S, Hong SC, Hugel T, Ingargiola A, Joo C, Kapanidis AN, Kim HD, Laurence T, Lee NK, Lee TH, Lemke EA, Margeat E, Michaelis J, Michalet X, Myong S, Nettels D, Peulen TO, Ploetz E, Razvag Y, Robb NC, Schuler B, Soleimaninejad H, Tang C, Vafabakhsh R, Lamb DC, Seidel CA, Weiss S. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.. eLife, 2021.
26. Ulku A, Ardelean A, Antolovic M, Weiss S, Charbon E, Bruschini C, Michalet X. Wide-field time-gated SPAD imager for phasor-based FLIM applications.. Methods and applications in fluorescence, 2020.
27. Yi X, Weiss S. Cusp-artifacts in high order superresolution optical fluctuation imaging.. Biomedical optics express, 2020.
28. Grupi A, Ashur I, Degani-Katzav N, Yudovich S, Shapira Z, Marzouq A, Morgenstein L, Mandel Y, Weiss S. Interfacing the Cell with "Biomimetic Membrane Proteins".. Small (Weinheim an der Bergstrasse, Germany), 2019.
29. Ankri R, Basu A, Ulku AC, Bruschini C, Charbon E, Weiss S, Michalet X. Single-Photon, Time-Gated, Phasor-Based Fluorescence Lifetime Imaging through Highly Scattering Medium.. ACS photonics, 2019.
30. Yudovich S, Shani L, Grupi A, Bar-Elli O, Steinitz D, Oron D, Weiss S. Ratiometric widefield imaging with spectrally balanced detection.. Biomedical optics express, 2019.
31. Park J, Kuo Y, Li J, Huang YL, Miller EW, Weiss S. Improved Surface Functionalization and Characterization of Membrane-Targeted Semiconductor Voltage Nanosensors.. The journal of physical chemistry letters, 2019.
32. Yi X, Son S, Ando R, Miyawaki A, Weiss S. Moments reconstruction and local dynamic range compression of high order superresolution optical fluctuation imaging.. Biomedical optics express, 2019.
33. Ulku AC, Bruschini C, Antolovic IM, Weiss S, Michalet X, Charbon E. Phasor-based widefield FLIM using a gated 512×512 single-photon SPAD imager.. Proceedings of SPIE--the International Society for Optical Engineering, 2019.
34. Chung S, Lerner E, Jin Y, Kim S, Alhadid Y, Grimaud LW, Zhang IX, Knobler CM, Gelbart WM, Weiss S. The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase.. Nucleic acids research, 2019.
35. Ghosh S, Chizhik AM, Yang G, Karedla N, Gregor I, Oron D, Weiss S, Enderlein J, Chizhik AI. Excitation and Emission Transition Dipoles of Type-II Semiconductor Nanorods.. Nano letters, 2019.
36. Chio US, Chung S, Weiss S, Shan SO. A Chaperone Lid Ensures Efficient and Privileged Client Transfer during Tail-Anchored Protein Targeting.. Cell reports, 2019.
37. Ingargiola A, Weiss S, Lerner E. Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET.. The journal of physical chemistry. B, 2018.
38. Schidorsky S, Yi X, Razvag Y, Sajman J, Hermon K, Weiss S, Sherman E. Synergizing superresolution optical fluctuation imaging with single molecule localization microscopy.. Methods and applications in fluorescence, 2018.
39. Ulku AC, Bruschini C, Antolovic IM, Charbon E, Kuo Y, Ankri R, Weiss S, Michalet X. A 512×512 SPAD Image Sensor with Integrated Gating for Widefield FLIM.. IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society, 2018.
40. Lee JH, Chandrasekar S, Chung S, Hwang Fu YH, Liu D, Weiss S, Shan SO. Sequential activation of human signal recognition particle by the ribosome and signal sequence drives efficient protein targeting.. Proceedings of the National Academy of Sciences of the United States of America, 2018.
41. Ingargiola A, Segal M, Gulinatti A, Rech I, Labanca I, Maccagnani P, Ghioni M, Weiss S, Michalet X. 48-spot single-molecule FRET setup with periodic acceptor excitation.. The Journal of chemical physics, 2018.
42. Lerner E, Ingargiola A, Weiss S. Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example.. The Journal of chemical physics, 2018.
43. Lerner E, Cordes T, Ingargiola A, Alhadid Y, Chung S, Michalet X, Weiss S. Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer.. Science (New York, N.Y.), 2018.
44. Park K, Kuo Y, Shvadchak V, Ingargiola A, Dai X, Hsiung L, Kim W, Zhou H, Zou P, Levine AJ, Li J, Weiss S. Membrane insertion of-and membrane potential sensing by-semiconductor voltage nanosensors: Feasibility demonstration.. Science advances, 2018.
45. Ingargiola A, Segal M, Gulinatti A, Rech I, Labanca I, Maccagnani P, Ghioni M, Weiss S, Michalet X. Optical crosstalk in SPAD arrays for high-throughput single-molecule fluorescence spectroscopy.. Nuclear instruments & methods in physics research. Section A, Accelerators, spectrometers, detectors and associated equipment, 2017.
46. Chio US, Chung S, Weiss S, Shan SO. A protean clamp guides membrane targeting of tail-anchored proteins.. Proceedings of the National Academy of Sciences of the United States of America, 2017.
47. Feng Z, Nam S, Hamouri F, Aujard I, Ducos B, Vriz S, Volovitch M, Jullien L, Lin S, Weiss S, Bensimon D. Optical Control of Tumor Induction in the Zebrafish.. Scientific reports, 2017.
48. Ingargiola A, Lerner E, Chung S, Panzeri F, Gulinatti A, Rech I, Ghioni M, Weiss S, Michalet X. Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules.. PloS one, 2017.
49. Alhadid Y, Chung S, Lerner E, Taatjes DJ, Borukhov S, Weiss S. Studying transcription initiation by RNA polymerase with diffusion-based single-molecule fluorescence.. Protein science : a publication of the Protein Society, 2017.
50. Lerner E, Ingargiola A, Lee JJ, Borukhov S, Michalet X, Weiss S. Different types of pausing modes during transcription initiation.. Transcription, 2017.
51. Park K, Weiss S. Design Rules for Membrane-Embedded Voltage-Sensing Nanoparticles.. Biophysical journal, 2017.
52. Ingargiola A, Peronio P, Lerner E, Gulinatti A, Rech I, Ghioni M, Weiss S, Michalet X. 16-Ch Time-resolved Single-Molecule Spectroscopy Using Line Excitation.. Proceedings of SPIE--the International Society for Optical Engineering, 2017.
53. Lerner E, Chung S, Allen BL, Wang S, Lee J, Lu SW, Grimaud LW, Ingargiola A, Michalet X, Alhadid Y, Borukhov S, Strick TR, Taatjes DJ, Weiss S. Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase.. Proceedings of the National Academy of Sciences of the United States of America, 2016.
54. Ploetz E, Lerner E, Husada F, Roelfs M, Chung S, Hohlbein J, Weiss S, Cordes T. Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers.. Scientific reports, 2016.
55. Ingargiola A, Lerner E, Chung S, Weiss S, Michalet X. FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET.. PloS one, 2016.
56. Lerner E, Ploetz E, Hohlbein J, Cordes T, Weiss S. A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET).. The journal of physical chemistry. B, 2016.
57. Ingargiola A, Laurence T, Boutelle R, Weiss S, Michalet X. Photon-HDF5: Open Data Format and Computational Tools for Timestamp-based Single-Molecule Experiments.. Proceedings of SPIE--the International Society for Optical Engineering, 2016.
58. Ingargiola A, Laurence T, Boutelle R, Weiss S, Michalet X. Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Experiments.. Biophysical journal, 2016.
59. Kisley L, Brunetti R, Tauzin LJ, Shuang B, Yi X, Kirkeminde AW, Higgins DA, Weiss S, Landes CF. Characterization of Porous Materials by Fluorescence Correlation Spectroscopy Super-resolution Optical Fluctuation Imaging.. ACS nano, 2015.
60. Barr I, Weitz SH, Atkin T, Hsu P, Karayiorgou M, Gogos JA, Weiss S, Guo F. Cobalt(III) Protoporphyrin Activates the DGCR8 Protein and Can Compensate microRNA Processing Deficiency.. Chemistry & biology, 2015.
61. Michalet X, Ingargiola A, Colyer RA, Scalia G, Weiss S, Maccagnani P, Gulinatti A, Rech I, Ghioni M. Silicon photon-counting avalanche diodes for single-molecule fluorescence spectroscopy.. IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society, 2014.
62. Weitz SH, Gong M, Barr I, Weiss S, Guo F. Processing of microRNA primary transcripts requires heme in mammalian cells.. Proceedings of the National Academy of Sciences of the United States of America, 2014.
63. Levy-Sakin M, Grunwald A, Kim S, Gassman NR, Gottfried A, Antelman J, Kim Y, Ho SO, Samuel R, Michalet X, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, Weinhold E, Weiss S, Ebenstein Y. Toward single-molecule optical mapping of the epigenome.. ACS nano, 2013.
64. Jung ME, Trzoss M, Tsay JM, Weiss S. A Bis(phosphine)-Modified Peptide Ligand for Stable and Luminescent Quantum Dots in Aqueous Media.. Synthesis, 2013.
65. Xu J, Chang J, Yan Q, Dertinger T, Bruchez M, Weiss S. Labeling Cytosolic Targets in Live Cells with Blinking Probes.. The journal of physical chemistry letters, 2013.
66. Feng Z, Zhang W, Xu J, Gauron C, Ducos B, Vriz S, Volovitch M, Jullien L, Weiss S, Bensimon D. Optical control and study of biological processes at the single-cell level in a live organism.. Reports on progress in physics. Physical Society (Great Britain), 2013.
67. Dertinger T, Pallaoro A, Braun G, Ly S, Laurence TA, Weiss S. Advances in superresolution optical fluctuation imaging (SOFI).. Quarterly reviews of biophysics, 2013.
68. Gallina ME, Xu J, Dertinger T, Aizer A, Shav-Tal Y, Weiss S. Resolving the spatial relationship between intracellular components by dual color super resolution optical fluctuations imaging (SOFI).. Optical nanoscopy, 2013.
69. Ingargiola A, Panzeri F, Sarkosh N, Gulinatti A, Rech I, Ghioni M, Weiss S, Michalet X. 8-spot smFRET analysis using two 8-pixel SPAD arrays.. Proceedings of SPIE--the International Society for Optical Engineering, 2013.
70. Panzeri F, Ingargiola A, Lin RR, Sarkhosh N, Gulinatti A, Rech I, Ghioni M, Cova S, Weiss S, Michalet X. Single-molecule FRET experiments with a red-enhanced custom technology SPAD.. Proceedings of SPIE--the International Society for Optical Engineering, 2013.
71. Xu J, Teslaa T, Wu TH, Chiou PY, Teitell MA, Weiss S. Nanoblade delivery and incorporation of quantum dot conjugates into tubulin networks in live cells.. Nano letters, 2012.
72. Park K, Deutsch Z, Li JJ, Oron D, Weiss S. Single molecule quantum-confined Stark effect measurements of semiconductor nanoparticles at room temperature.. ACS nano, 2012.
73. Xu J, Ruchala P, Ebenstain Y, Li JJ, Weiss S. Stable, compact, bright biofunctional quantum dots with improved peptide coating.. The journal of physical chemistry. B, 2012.
74. Xu L, Feng Z, Sinha D, Ducos B, Ebenstein Y, Tadmor AD, Gauron C, Le Saux T, Lin S, Weiss S, Vriz S, Jullien L, Bensimon D. Spatiotemporal manipulation of retinoic acid activity in zebrafish hindbrain development via photo-isomerization.. Development (Cambridge, England), 2012.
75. Kim S, Gottfried A, Lin RR, Dertinger T, Kim AS, Chung S, Colyer RA, Weinhold E, Weiss S, Ebenstein Y. Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins.. Angewandte Chemie (International ed. in English), 2012.
76. Colyer RA, Siegmund OH, Tremsin AS, Vallerga JV, Weiss S, Michalet X. Phasor imaging with a widefield photon-counting detector.. Journal of biomedical optics, 2012.
77. Dertinger T, Colyer R, Vogel R, Heilemann M, Sauer M, Enderlein J, Weiss S. Superresolution optical fluctuation imaging (SOFI).. Advances in experimental medicine and biology, 2012.
78. Iyer G, Pinaud F, Xu J, Ebenstein Y, Li J, Chang J, Dahan M, Weiss S. Aromatic aldehyde and hydrazine activated peptide coated quantum dots for easy bioconjugation and live cell imaging.. Bioconjugate chemistry, 2011.
79. Colyer RA, Scalia G, Villa FA, Guerrieri F, Tisa S, Zappa F, Cova S, Weiss S, Michalet X. Ultra high-throughput single molecule spectroscopy with a 1024 pixel SPAD.. Proceedings of SPIE--the International Society for Optical Engineering, 2011.
80. Dertinger T, Heilemann M, Vogel R, Sauer M, Weiss S. Superresolution optical fluctuation imaging with organic dyes.. Angewandte Chemie (International ed. in English), 2010.
81. Colyer RA, Scalia G, Rech I, Gulinatti A, Ghioni M, Cova S, Weiss S, Michalet X. High-throughput FCS using an LCOS spatial light modulator and an 8 × 1 SPAD array.. Biomedical optics express, 2010.
82. Dertinger T, Colyer R, Vogel R, Enderlein J, Weiss S. Achieving increased resolution and more pixels with Superresolution Optical Fluctuation Imaging (SOFI).. Optics express, 2010.
83. Colyer RA, Scalia G, Kim T, Rech I, Resnati D, Marangoni S, Ghioni M, Cova S, Weiss S, Michalet X. High-throughput multispot single-molecule spectroscopy.. Proceedings of SPIE--the International Society for Optical Engineering, 2010.
84. Iyer G, Michalet X, Chang YP, Weiss S. Tracking single proteins in live cells using single-chain antibody fragment-fluorescent quantum dot affinity pair.. Methods in enzymology, 2010.
85. Liu C, Chung SY, Lee S, Weiss S, Neuhauser D. Adsorbate-induced absorption redshift in an organic-inorganic cluster conjugate: Electronic effects of surfactants and organic adsorbates on the lowest excited states of a methanethiol-CdSe conjugate.. The Journal of chemical physics, 2009.
86. Ebenstein Y, Gassman N, Kim S, Weiss S. Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes.. Journal of molecular recognition : JMR, 2009.
87. Barat B, Sirk SJ, McCabe KE, Li J, Lepin EJ, Remenyi R, Koh AL, Olafsen T, Gambhir SS, Weiss S, Wu AM. Cys-diabody quantum dot conjugates (immunoQdots) for cancer marker detection.. Bioconjugate chemistry, 2009.
88. Tremsin AS, Siegmund OH, Vallerga JV, Raffanti R, Weiss S, Michalet X. High Speed Multichannel Charge Sensitive Data Acquisition System with Self-Triggered Event Timing.. IEEE transactions on nuclear science, 2009.
89. Antelman J, Wilking-Chang C, Weiss S, Michalet X. Nanometer distance measurements between multicolor quantum dots.. Nano letters, 2009.
90. Ebenstein Y, Gassman N, Kim S, Antelman J, Kim Y, Ho S, Samuel R, Michalet X, Weiss S. Lighting up individual DNA binding proteins with quantum dots.. Nano letters, 2009.
91. Antelman J, Ebenstein Y, Dertinger T, Michalet X, Weiss S. Suppression of quantum dot blinking in DTT-doped polymer films.. The journal of physical chemistry. C, Nanomaterials and interfaces, 2009.
92. Pinaud F, Michalet X, Iyer G, Margeat E, Moore HP, Weiss S. Dynamic partitioning of a glycosyl-phosphatidylinositol-anchored protein in glycosphingolipid-rich microdomains imaged by single-quantum dot tracking.. Traffic (Copenhagen, Denmark), 2009.
93. Bentolila LA, Ebenstein Y, Weiss S. Quantum dots for in vivo small-animal imaging.. Journal of nuclear medicine : official publication, Society of Nuclear Medicine, 2009.
94. Gassman NR, Ho SO, Korlann Y, Chiang J, Wu Y, Perry LJ, Kim Y, Weiss S. In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1.. Protein expression and purification, 2008.
95. Iyer G, Michalet X, Chang YP, Pinaud FF, Matyas SE, Payne G, Weiss S. High affinity scFv-hapten pair as a tool for quantum dot labeling and tracking of single proteins in live cells.. Nano letters, 2008.
96. Korlann Y, Dertinger T, Michalet X, Weiss S, Enderlein J. Measuring diffusion with polarization-modulation dual-focus fluorescence correlation spectroscopy.. Optics express, 2008.
97. Hamadani KM, Weiss S. Nonequilibrium single molecule protein folding in a coaxial mixer.. Biophysical journal, 2008.
98. Kim Y, Ho SO, Gassman NR, Korlann Y, Landorf EV, Collart FR, Weiss S. Efficient site-specific labeling of proteins via cysteines.. Bioconjugate chemistry, 2008.
99. Michalet X, Cheng A, Antelman J, Suyama M, Arisaka K, Weiss S. Hybrid photodetector for single-molecule spectroscopy and microscopy.. Proceedings of SPIE--the International Society for Optical Engineering, 2008.
100. Majumdar DS, Smirnova I, Kasho V, Nir E, Kong X, Weiss S, Kaback HR. Single-molecule FRET reveals sugar-induced conformational dynamics in LacY.. Proceedings of the National Academy of Sciences of the United States of America, 2007.
101. Tsay JM, Trzoss M, Shi L, Kong X, Selke M, Jung ME, Weiss S. Singlet oxygen production by Peptide-coated quantum dot-photosensitizer conjugates.. Journal of the American Chemical Society, 2007.
102. Iyer G, Pinaud F, Tsay J, Weiss S. Solubilization of quantum dots with a recombinant peptide from Escherichia coli.. Small (Weinheim an der Bergstrasse, Germany), 2007.
103. Kong X, Nir E, Hamadani K, Weiss S. Photobleaching pathways in single-molecule FRET experiments.. Journal of the American Chemical Society, 2007.
104. Doose S, Heilemann M, Michalet X, Weiss S, Kapanidis AN. Periodic acceptor excitation spectroscopy of single molecules.. European biophysics journal : EBJ, 2007.
105. Iyer G, Pinaud F, Tsay J, Li JJ, Bentolila LA, Michalet X, Weiss S. Peptide coated quantum dots for biological applications.. IEEE transactions on nanobioscience, 2006.
106. Kapanidis AN, Margeat E, Ho SO, Kortkhonjia E, Weiss S, Ebright RH. Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism.. Science (New York, N.Y.), 2006.
107. Nir E, Michalet X, Hamadani KM, Laurence TA, Neuhauser D, Kovchegov Y, Weiss S. Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments.. The journal of physical chemistry. B, 2006.
108. Michalet X, Weiss S, Jäger M. Single-molecule fluorescence studies of protein folding and conformational dynamics.. Chemical reviews, 2006.
109. Iyer G, Li JJ, Pinaud F, Tsay JM, Bentolila LA, Michalet X, Weiss S. Near-infrared peptide-coated quantum dots for small animal imaging.. Proceedings of SPIE--the International Society for Optical Engineering, 2006.
110. Michalet X, Weiss S. Using photon statistics to boost microscopy resolution.. Proceedings of the National Academy of Sciences of the United States of America, 2006.
111. Tsay JM, Doose S, Weiss S. Rotational and translational diffusion of peptide-coated CdSe/CdS/ZnS nanorods studied by fluorescence correlation spectroscopy.. Journal of the American Chemical Society, 2006.
112. Ohnuki T, Michalet X, Tripathi A, Weiss S, Arisaka K. Development of an ultrafast single photon counting imager for single molecule imaging.. Proceedings of SPIE--the International Society for Optical Engineering, 2006.
113. Jäger M, Nir E, Weiss S. Site-specific labeling of proteins for single-molecule FRET by combining chemical and enzymatic modification.. Protein science : a publication of the Protein Society, 2006.
114. Bentolila LA, Weiss S. Single-step multicolor fluorescence in situ hybridization using semiconductor quantum dot-DNA conjugates.. Cell biochemistry and biophysics, 2006.
115. Pinaud F, Michalet X, Bentolila LA, Tsay JM, Doose S, Li JJ, Iyer G, Weiss S. Advances in fluorescence imaging with quantum dot bio-probes.. Biomaterials, 2005.
116. Margeat E, Kapanidis AN, Tinnefeld P, Wang Y, Mukhopadhyay J, Ebright RH, Weiss S. Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.. Biophysical journal, 2005.
117. Laurence TA, Kong X, Jäger M, Weiss S. Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins.. Proceedings of the National Academy of Sciences of the United States of America, 2005.
118. Kapanidis AN, Margeat E, Laurence TA, Doose S, Ho SO, Mukhopadhyay J, Kortkhonjia E, Mekler V, Ebright RH, Weiss S. Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.. Molecular cell, 2005.
119. Jäger M, Michalet X, Weiss S. Protein-protein interactions as a tool for site-specific labeling of proteins.. Protein science : a publication of the Protein Society, 2005.
120. Li JJ, Tsay JM, Michalet X, Weiss S. Wavefunction engineering: From quantum wells to near-infrared type-II colloidal quantum dots synthesized by layer-by-layer colloidal epitaxy.. Chemical physics, 2005.
121. Doose S, Tsay JM, Pinaud F, Weiss S. Comparison of photophysical and colloidal properties of biocompatible semiconductor nanocrystals using fluorescence correlation spectroscopy.. Analytical chemistry, 2005.
122. Tsay JM, Doose S, Pinaud F, Weiss S. Enhancing the photoluminescence of peptide-coated nanocrystals with shell composition and UV irradiation.. The journal of physical chemistry. B, 2005.
123. Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation.. Biophysical journal, 2005.
124. Hertzog DE, Michalet X, Jäger M, Kong X, Santiago JG, Weiss S, Bakajin O. Femtomole mixer for microsecond kinetic studies of protein folding.. Analytical chemistry, 2004.
125. Kapanidis AN, Lee NK, Laurence TA, Doose S, Margeat E, Weiss S. Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules.. Proceedings of the National Academy of Sciences of the United States of America, 2004.
126. Pinaud F, King D, Moore HP, Weiss S. Bioactivation and cell targeting of semiconductor CdSe/ZnS nanocrystals with phytochelatin-related peptides.. Journal of the American Chemical Society, 2004.
127. Tsay JM, Pflughoefft M, Bentolila LA, Weiss S. Hybrid approach to the synthesis of highly luminescent CdTe/ZnS and CdHgTe/ZnS nanocrystals.. Journal of the American Chemical Society, 2004.
128. Michalet X, Kapanidis AN, Laurence T, Pinaud F, Doose S, Pflughoefft M, Weiss S. The power and prospects of fluorescence microscopies and spectroscopies.. Annual review of biophysics and biomolecular structure, 2003.
129. Laurence TA, Weiss S. Analytical chemistry. How to detect weak pairs.. Science (New York, N.Y.), 2003.
130. Michalet X, Lacoste TD, Pinaud F, Chemla DS, Alivisatos AP, Weiss S. Ultrahigh-resolution multicolor colocalization of single fluorescent nanocrystals.. Proceedings of SPIE--the International Society for Optical Engineering, 2001.